genopandas
0.1
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genopandas
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Index
Index
A
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C
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D
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E
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F
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G
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I
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M
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N
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P
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Q
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R
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S
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T
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U
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V
A
annotate() (genopandas.core.matrix.GenomicMatrix method)
AnnotatedMatrix (class in genopandas.core.matrix)
as_segments() (genopandas.ngs.cnv.CnvValueMatrix method)
C
chromosome (genopandas.core.frame.GenomicIndexer attribute)
chromosome_lengths (genopandas.core.frame.GenomicDataFrame attribute)
(genopandas.core.frame.GenomicIndexer attribute)
chromosome_offsets (genopandas.core.frame.GenomicDataFrame attribute)
(genopandas.core.frame.GenomicIndexer attribute)
chromosomes (genopandas.core.frame.GenomicIndexer attribute)
CnvCallMatrix (class in genopandas.ngs.cnv)
CnvValueMatrix (class in genopandas.ngs.cnv)
concat() (genopandas.core.matrix.AnnotatedMatrix class method)
D
difference() (genopandas.core.tree.GenomicIntervalTree method)
drop_duplicate_indices() (genopandas.core.matrix.AnnotatedMatrix method)
dropna_samples() (genopandas.core.matrix.AnnotatedMatrix method)
E
end (genopandas.core.frame.GenomicIndexer attribute)
end_offset (genopandas.core.frame.GenomicIndexer attribute)
expand() (genopandas.core.matrix.GenomicMatrix method)
ExpressionMatrix (class in genopandas.ngs.rna)
F
feature_data (genopandas.core.matrix.AnnotatedMatrix attribute)
from_csv() (genopandas.core.frame.GenomicDataFrame class method)
(genopandas.core.matrix.GenomicMatrix class method)
from_csv_condensed() (genopandas.core.matrix.GenomicMatrix class method)
from_df() (genopandas.core.frame.GenomicDataFrame class method)
(genopandas.core.matrix.GenomicMatrix class method)
from_gtf() (genopandas.core.frame.GenomicDataFrame class method)
from_position_df() (genopandas.core.frame.GenomicDataFrame class method)
from_records() (genopandas.core.frame.GenomicDataFrame class method)
from_subread() (genopandas.ngs.rna.ExpressionMatrix class method)
from_tuples() (genopandas.core.tree.GenomicIntervalTree class method)
G
gdf (genopandas.core.frame.GenomicIndexer attribute)
GenomicDataFrame (class in genopandas.core.frame)
GenomicIndexer (class in genopandas.core.frame)
GenomicIntervalTree (class in genopandas.core.tree)
GenomicMatrix (class in genopandas.core.matrix)
gloc (genopandas.core.frame.GenomicDataFrame attribute)
(genopandas.core.matrix.GenomicMatrix attribute)
I
impute() (genopandas.core.matrix.GenomicMatrix method)
intersection() (genopandas.core.tree.GenomicIntervalTree method)
is_empty() (genopandas.core.tree.GenomicIntervalTree method)
M
mask_with_controls() (genopandas.ngs.cnv.CnvCallMatrix method)
melt() (genopandas.core.matrix.AnnotatedMatrix method)
N
normalize() (genopandas.ngs.rna.ExpressionMatrix method)
P
pca() (genopandas.core.matrix.AnnotatedMatrix method)
plot_feature() (genopandas.core.matrix.AnnotatedMatrix method)
plot_heatmap() (genopandas.core.matrix.AnnotatedMatrix method)
(genopandas.core.matrix.GenomicMatrix method)
plot_pca() (genopandas.core.matrix.AnnotatedMatrix method)
plot_pca_variance() (genopandas.core.matrix.AnnotatedMatrix method)
plot_sample() (genopandas.core.matrix.GenomicMatrix method)
position (genopandas.core.frame.GenomicIndexer attribute)
position_offset (genopandas.core.frame.GenomicIndexer attribute)
Q
query_samples() (genopandas.core.matrix.AnnotatedMatrix method)
R
rebuild() (genopandas.core.frame.GenomicIndexer method)
rename() (genopandas.core.matrix.AnnotatedMatrix method)
rename_chromosomes() (genopandas.core.frame.GenomicDataFrame method)
(genopandas.core.matrix.GenomicMatrix method)
resample() (genopandas.core.matrix.GenomicMatrix method)
reset_index() (genopandas.core.frame.GenomicDataFrame method)
S
sample_data (genopandas.core.matrix.AnnotatedMatrix attribute)
search() (genopandas.core.frame.GenomicIndexer method)
(genopandas.core.tree.GenomicIntervalTree method)
start (genopandas.core.frame.GenomicIndexer attribute)
start_offset (genopandas.core.frame.GenomicIndexer attribute)
T
to_csv() (genopandas.core.matrix.AnnotatedMatrix method)
to_igv() (genopandas.ngs.cnv.CnvValueMatrix method)
trees (genopandas.core.frame.GenomicIndexer attribute)
U
union() (genopandas.core.tree.GenomicIntervalTree method)
V
values (genopandas.core.matrix.AnnotatedMatrix attribute)