PyIM

PyIM (Python Insertional Mutagenesis) is a python package for analyzing insertional mutagenesis data from targeted sequencing of transposon insertion sites. The package provides several command line tools for identifying insertions, calling common insertion sites (CISs) and annotating insertions/CISs directly from the command line. It also aims to provides the basic building blocks for implementing new pipelines, CIS callers, etc.

Disclaimer: the documentation is a work-in-progress and is under active development. For details on the different commands/pipelines, see the help of the respective commands.